Bioinformatic and Software Developer at Center for International Forestry Research (CIFOR)

Duties and responsibilities

Data Analysis

•  Analyse agricultural research experiments (low, mid, and high-volume sequencing/genotyping data).
•  Processing of large files and perform various bioinformatics analysis.

Software development

•  Collaborate with software developers in the development and modification of commercial bioinformatics software.
•  Develop software or applications for scientific or technical use.
•  Developing Python and Angular / React (or other) web framework-based GUI web-apps.
•  Manage Linux based servers and understand virtualizations and dockers.

Local and International Support

•  Collaborate with technical specialists to resolve design or development problems.
•  Contribute to organizing and delivering OneCGIAR training programs in bioinformatics data analysis, data management, digitalization and using interlinked tools.
•  Support the integration of roles and projects into the new OneCGIAR global units.

Requirements

•  Masters in life Science.
•  PhD qualification in the same field will be an added advantage
•  Thorough understanding of the field of work or specialized equipment.
•  Basic knowledge of administrative and/or operating protocols and procedures of research support function.
•  Up to 5 years work experience.
•  Conceptual knowledge and understanding of NGS data analysis, and pipeline development for variant calling & developing reference assemblies.
•  Communicate effectively with colleagues and external contacts on routine work-related matters.
•  Competence in using shell scripts, Snakemake, Nextflow and/or WSL.
•  Experience in Core JAVA, using APIs and developing API driven applications.
•  Proficiency in Python, Perl and R.

Personal attributes and competencies

•  Fluency in spoken and written English
•  Ability to analyze complex data, carry out and explain computations or to resolve complex problems.
•  Identifying options based on research and consideration of their consequences.
•  Provides inputs into decision making on complex problems.
•  Deep understanding of NGS data analysis, and pipeline development for variant calling & developing reference assemblies.
•  Proficiency in using Linux and maintaining Linux based servers and clusters
•  Experience in web frameworks, such as Angular or React
•  Knowledge of relational data management systems and demonstrated ability to extract data and navigate systems
•  Experience in working within international organizations or multicultural organizations desired
•  Critical and Creative Thinking, Teamwork, Communication and Client Orientation skills.

Education, knowledge and experience

•  Masters in life Science.
•  PhD qualification in the same field will be an added advantage.
•  Up to 5 years work experience.

Terms and conditions

•  This is a Locally Recruited Staff (LRS) position and on competitive remuneration in local currency, commensurate with skills and experience.