Bioinformatic and Software Developer at Center for International Forestry Research (CIFOR)

Duties and responsibilities

Data Analysis

• Analyse agricultural research experiments (low, mid, and high-volume sequencing/genotyping data).
• Processing of large files and perform various bioinformatics analysis.

Software development

• Collaborate with software developers in the development and modification of commercial bioinformatics software.
• Develop software or applications for scientific or technical use.
• Developing Python and Angular / React (or other) web framework-based GUI web-apps.
• Manage Linux based servers and understand virtualizations and dockers.

Local and International Support

• Collaborate with technical specialists to resolve design or development problems.
• Contribute to organizing and delivering OneCGIAR training programs in bioinformatics data analysis, data management, digitalization and using interlinked tools.
• Support the integration of roles and projects into the new OneCGIAR global units.

Requirements

• Masters in life Science.
• PhD qualification in the same field will be an added advantage
• Thorough understanding of the field of work or specialized equipment.
• Basic knowledge of administrative and/or operating protocols and procedures of research support function.
• Up to 5 years work experience.
• Conceptual knowledge and understanding of NGS data analysis, and pipeline development for variant calling & developing reference assemblies.
• Communicate effectively with colleagues and external contacts on routine work-related matters.
• Competence in using shell scripts, Snakemake, Nextflow and/or WSL.
• Experience in Core JAVA, using APIs and developing API driven applications.
•  Proficiency in Python, Perl and R.

Personal attributes and competencies

• Fluency in spoken and written English
• Ability to analyze complex data, carry out and explain computations or to resolve complex problems.
• Identifying options based on research and consideration of their consequences.
• Provides inputs into decision making on complex problems.
• Deep understanding of NGS data analysis, and pipeline development for variant calling & developing reference assemblies.
• Proficiency in using Linux and maintaining Linux based servers and clusters
• Experience in web frameworks, such as Angular or React
• Knowledge of relational data management systems and demonstrated ability to extract data and navigate systems
• Experience in working within international organizations or multicultural organizations desired
• Critical and Creative Thinking, Teamwork, Communication and Client Orientation skills.

The application deadline is 05 Feb-2023